PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G323400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NF-YB
Protein Properties Length: 173aa    MW: 19105.3 Da    PI: 5.3092
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G323400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB154.12.5e-48398297
               NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94
                         eqd +lPianv+rimk++lP++akisk+ak+ +qec++ef+sfvt+easdkc++e+rkt+ngdd++wal+ lGf++y+++   yl+kyre+e
  Prupe.6G323400.1.p  3 DEQDGLLPIANVGRIMKQILPQRAKISKEAKQRMQECATEFLSFVTAEASDKCHKENRKTVNGDDICWALSALGFDNYAQATIRYLHKYREAE 95
                        69******************************************************************************************* PP

               NF-YB 95 gek 97
                        ++k
  Prupe.6G323400.1.p 96 RDK 98
                        *97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.1E-462111IPR009072Histone-fold
SuperFamilySSF471138.85E-365112IPR009072Histone-fold
PfamPF008081.9E-24972IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.2E-163654No hitNo description
PRINTSPR006158.2E-165573No hitNo description
PRINTSPR006158.2E-167492No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MVDEQDGLLP IANVGRIMKQ ILPQRAKISK EAKQRMQECA TEFLSFVTAE ASDKCHKENR  60
KTVNGDDICW ALSALGFDNY AQATIRYLHK YREAERDKAA ANANNNNQNK AADIILMSSG  120
QDMNDIGDRA ASIYMASQQG LQVGEQTQTP DLEFRLLGKG DGTKPSVDQE HN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-39293192Transcription factor HapC (Eurofung)
4g92_B3e-39293192Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008246442.11e-111PREDICTED: nuclear transcription factor Y subunit B-4
SwissprotO040276e-54NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLM5WPU46e-94M5WPU4_PRUPE; Uncharacterized protein (Fragment)
STRINGVIT_14s0060g02660.t011e-61(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.12e-53nuclear factor Y, subunit B4